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Citing CMDGA
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Assay category
3
DNA accessibility
Assay
693
ChIP-seq
total RNA-seq
102
single cell RNA-seq
6
WGBS
5
GRO-seq
4
RRBS
3
DNase-seq
2
FAIRE-seq
1
ATAC-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Organ
1
brain
1
pancreas
Life stage
2
unknown
1
embryonic
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
3
fastq
2
bed broadPeak
2
bigBed broadPeak
1
bed bed3+
Platform
2
Illumina HiSeq 2000
1
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
Run type
10
paired-ended
3
single-ended
Read length (nt)
2
36
1
20
1
101
Library made from
3
DNA
Date released
2
August, 2017
1
November, 2018
Lab
3
AMP-T2D consortium
Replication type
1
anisogenic
1
isogenic
1
unreplicated
organ_slims!
blood vessel
assay_title!
total RNA-seq
Showing 3 of 3 results
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Experiment
TSTSR021OZY
released
DNase-seq
of brain
Homo sapiens
brain male embryo (105 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP