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Assay category
2
DNA accessibility
Assay
1612
ChIP-seq
1516
total RNA-seq
527
ATAC-seq
360
single cell RNA-seq
180
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
55
pCHi-C
31
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
2
AMP
RFA
2
AMP
Experiment status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
primary cell
1
tissue
Organ
1
blood vessel
brain
1
epithelium
1
kidney
1
vasculature
1
vein
Life stage
1
adult
1
newborn
Available data
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
tar
Platform
Illumina Genome Analyzer I
Library made from
2
DNA
Date released
1
July, 2019
1
October, 2019
Lab
2
AMP-T2D consortium
Replication type
1
anisogenic
1
isogenic
files.platform.term_name!
Illumina Genome Analyzer I
organ_slims!
brain
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Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR821PLA
released
FAIRE-seq
of kidney
Homo sapiens
kidney female adult (30 years) and male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP