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Assay category
4
DNA accessibility
1
DNA sequencing
Assay
1761
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
362
single cell RNA-seq
203
DNase-seq
87
RNA microarray
84
snATAC-seq
68
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
5
AMP
RFA
4
AMP
1
AMP2
Experiment status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Biosample type
3
tissue
1
cell line
1
primary cell
Organ
1
blood vessel
1
brain
1
epithelium
1
kidney
1
liver
1
pancreas
1
vasculature
1
vein
Life stage
2
adult
2
unknown
1
newborn
Available data
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
1
fastq
1
tar
1
vcf
Platform
1
Illumina Genome Analyzer I
Run type
1
single-ended
Read length (nt)
1
35
Library made from
5
DNA
Date released
2
July, 2019
1
August, 2017
1
August, 2021
November, 2018
1
October, 2019
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
2
anisogenic
2
unreplicated
1
isogenic
month_released!
November, 2018
Showing 5 of 5 results
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Experiment
DSR246XUG
released
whole genome sequencing assay
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR821PLA
released
FAIRE-seq
of kidney
Homo sapiens
kidney female adult (30 years) and male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR405QWU
released
FAIRE-seq
of frontal cortex
Homo sapiens
frontal cortex female adult (67 years) and female adult (80 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP