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Assay category
2
DNA accessibility
Assay
1420
total RNA-seq
1158
ChIP-seq
530
ATAC-seq
267
single cell RNA-seq
207
DNase-seq
87
RNA microarray
84
snATAC-seq
69
WGBS
57
pCHi-C
32
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
7
AMP
RFA
5
AMP2
2
AMP
Experiment status
7
released
Genome assembly (visualization)
2
hg19
Organism
7
Homo sapiens
Biosample type
5
cell line
2
tissue
Organ
3
kidney
2
liver
1
blood vessel
1
brain
1
epithelium
1
vasculature
vein
Life stage
5
unknown
2
adult
Available data
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
Run type
single-ended
Library made from
5
RNA
2
DNA
Date released
5
August, 2021
2
July, 2019
Lab
5
Bing Ren, UCSD
2
AMP-T2D consortium
Replication type
4
isogenic
2
anisogenic
1
unreplicated
Audit category:
1
inconsistent ontology term
organ_slims!
vein
files.run_type!
single-ended
Showing 7 of 7 results
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Experiment
DSR433YZO
released
Audit error
1
STARR-seq
of Synthesized DNA
Homo sapiens
Synthesized DNA
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR894OMX
released
STARR-seq
of HEK293T
Homo sapiens
HEK293T
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR661CGV
released
STARR-seq
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR090FJR
released
STARR-seq
of HEK293T
Homo sapiens
HEK293T
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR594DXF
released
STARR-seq
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR821PLA
released
FAIRE-seq
of kidney
Homo sapiens
kidney female adult (30 years) and male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR405QWU
released
FAIRE-seq
of frontal cortex
Homo sapiens
frontal cortex female adult (67 years) and female adult (80 years)
Lab:
AMP-T2D consortium
Project:
AMP