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Assay category
1
DNA accessibility
Assay
961
ChIP-seq
403
total RNA-seq
167
DNase-seq
161
ATAC-seq
148
single cell RNA-seq
49
pCHi-C
21
snATAC-seq
13
Hi-C
13
WGBS
11
RRBS
10
small RNA-seq
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
1
AMP
RFA
1
AMP
Experiment status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Organ
1
blood vessel
1
epithelium
1
vasculature
1
vein
Life stage
adult
1
newborn
Available data
1
bam
1
bed narrowPeak
1
bigBed narrowPeak
1
bigWig
1
tar
Platform
Illumina Genome Analyzer I
Library made from
1
DNA
Date released
1
October, 2019
Lab
1
AMP-T2D consortium
Replication type
1
isogenic
replicates.library.biosample.life_stage!
adult
files.platform.term_name!
Illumina Genome Analyzer I
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Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP