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Assay
1286
total RNA-seq
1116
ChIP-seq
336
ATAC-seq
274
single cell RNA-seq
163
DNase-seq
87
RNA microarray
72
snATAC-seq
67
WGBS
15
Hi-C
7
small RNA-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
snDrop-seq
1
whole genome sequencing assay
Project
4
AMP
2
T1D
RFA
4
AMP
2
T1D
Experiment status
6
released
Genome assembly (visualization)
4
hg18
Organism
6
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
cell line
stem cell
Organ
1
embryo
Life stage
6
unknown
Available data
4
bigWig
4
fastq
Platform
4
Illumina HiSeq 2500
Run type
4
single-ended
Read length (nt)
4
50
Library made from
6
DNA
Date released
4
January, 2018
2
February, 2023
Lab
4
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Replication type
6
unreplicated
biosample_type!
stem cell
Showing 6 of 6 results
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Experiment
DSR498QQL
released
HiChIP
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR895OVT
released
HiChIP
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
TSTSR520547
released
GRO-seq
of Posterior foregut
Homo sapiens
Posterior foregut
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171680
released
GRO-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR641241
released
GRO-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR626869
released
GRO-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Lab:
AMP-T2D consortium
Project:
AMP