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Citing CMDGA
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Assay category
1
DNA accessibility
Assay
198
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
4
hg18
1
GRCh38
1
hg19
Organism
5
Homo sapiens
Biosample type
178
tissue
31
primary cell
5
in vitro differentiated cells
2
cell line
1
stem cell
Organ
1
connective tissue
1
embryo
Life stage
5
unknown
Available data
5
bigWig
5
fastq
1
bam
1
bed broadPeak
1
bed narrowPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Platform
4
Illumina HiSeq 2500
1
Illumina HiSeq 2000
Run type
4
single-ended
1
paired-ended
Read length (nt)
4
50
1
36
Library made from
5
DNA
Date released
4
January, 2018
1
August, 2017
Lab
5
AMP-T2D consortium
Replication type
4
unreplicated
1
isogenic
Showing 5 of 5 results
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Experiment
TSTSR520547
released
GRO-seq
of Posterior foregut
Homo sapiens
Posterior foregut
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171680
released
GRO-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR641241
released
GRO-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR626869
released
GRO-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999372
released
DNase-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP