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Citing CMDGA
Clear Filters
Assay category
6
3D chromatin structure
Assay
1130
total RNA-seq
909
ChIP-seq
370
ATAC-seq
215
single cell RNA-seq
84
RNA microarray
63
snATAC-seq
WGBS
45
DNase-seq
10
RRBS
8
pCHi-C
8
small RNA-seq
6
Hi-C
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
1
DNAme array
Project
6
AMP
RFA
5
AMP
1
AMP2
Experiment status
6
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
6
Homo sapiens
Biosample type
5
tissue
1
cell line
Organ
4
limb
4
musculature of body
2
pancreas
Life stage
6
adult
4
unknown
1
child
Available data
hic
13
bedpe bed3+
3
cool
1
bed bed3+
1
bedpe
1
bigWig
1
hdf5
Library made from
6
DNA
Date released
4
July, 2019
1
August, 2021
1
October, 2019
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
4
unreplicated
1
anisogenic
1
isogenic
Audit category:
1
inconsistent assembly
assay_title!
WGBS
files.file_type!
hic
Showing 6 of 6 results
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Experiment
DSR942HZR
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR998CGE
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR851SPB
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR920BPY
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR163ZFS
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis male adult (37 years)
Lab:
AMP-T2D consortium
Project:
AMP