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Schema
Citing CMDGA
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Assay category
4
DNA accessibility
2
3D chromatin structure
Assay
419
ChIP-seq
39
total RNA-seq
38
single cell RNA-seq
17
ATAC-seq
13
snATAC-seq
11
WGBS
4
DNase-seq
2
Hi-C
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
4
GRCh38
3
hg19
Organism
6
Homo sapiens
Biosample type
2
cell line
2
primary cell
2
tissue
Organ
3
epithelium
3
kidney
1
heart
1
liver
1
musculature of body
Life stage
143
embryonic
66
adult
29
unknown
6
child
2
newborn
Available data
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bedpe bed3+
1
fastq
1
hic
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
6
DNA
Date released
3
June, 2019
1
December, 2018
1
March, 2020
1
October, 2019
Lab
6
AMP-T2D consortium
Replication type
4
isogenic
2
unreplicated
assay_title!
HiChIP
Showing 6 of 6 results
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Experiment
DSR656CHU
released
Hi-C
of psoas muscle
Homo sapiens
psoas muscle male child (3 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR366LGT
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR745VQE
released
DNase-seq
of heart
Homo sapiens
heart male child (3 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR837LEC
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell child (3 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR170ZFE
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell child (3 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP