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Schema
Citing CMDGA
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Assay category
6
3D chromatin structure
Assay
259
ChIP-seq
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Project
3
HPAP
2
AMP
1
ITG
RFA
3
HPAP
2
AMP
1
ITG
Experiment status
6
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
15
tissue
6
primary cell
4
cell line
4
in vitro differentiated cells
Organ
7
epithelium
blood vessel
4
vasculature
3
brain
3
pancreas
2
vein
1
connective tissue
1
liver
Life stage
4
adult
2
unknown
Available data
4
hic
3
bedpe bed3+
3
cool
2
bed bed3+
2
bigWig
2
hdf5
Library made from
6
DNA
Date released
3
October, 2022
2
July, 2019
1
March, 2023
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
1
ITG
Replication type
4
anisogenic
2
isogenic
Audit category:
3
audit script error
organ_slims!
blood vessel
Showing 6 of 6 results
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR177NQH
released
Audit error
1
Hi-C
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell female adult (40 years) and female adult (58 years) and male adult (19 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR954WVM
released
Audit error
1
Hi-C
of pancreatic beta cell
Homo sapiens
pancreatic beta cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR767WCG
released
Audit error
1
Hi-C
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR770TGA
released
Hi-C
of brain pericyte
Homo sapiens
brain pericyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR270TQF
released
Hi-C
of astrocyte of the cerebellum
Homo sapiens
astrocyte of the cerebellum
Lab:
AMP-T2D consortium
Project:
AMP