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Schema
Citing CMDGA
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Assay category
3
3D chromatin structure
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
2
AMP
1
AMP2
Experiment status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
16
tissue
10
primary cell
4
in vitro differentiated cells
3
cell line
Organ
2
liver
1
epithelium
1
pancreas
Life stage
1
child
1
embryonic
1
unknown
Available data
2
bedpe bed3+
2
hic
1
fastq
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
3
DNA
Date released
1
August, 2021
1
December, 2018
1
November, 2019
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
2
unreplicated
1
isogenic
Audit category:
1
inconsistent ontology term
Audit category:
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
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Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR433ZII
released
Audit error
1
Hi-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP