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Schema
Citing CMDGA
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Assay category
3
3D chromatin structure
Assay
466
ChIP-seq
104
total RNA-seq
29
ATAC-seq
6
pCHi-C
3
Hi-C
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
13
tissue
6
primary cell
4
in vitro differentiated cells
3
cell line
Organ
2
pancreas
1
epithelium
1
liver
Life stage
1
adult
1
child
1
embryonic
Available data
1
bed bed3+
1
bedpe bed3+
1
bigWig
1
fastq
1
hdf5
1
hic
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
3
DNA
Date released
1
December, 2018
1
November, 2019
1
October, 2019
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
2
isogenic
1
unreplicated
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
Showing 3 of 3 results
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Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR433ZII
released
Audit error
1
Hi-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP