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Schema
Citing CMDGA
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Assay category
3
3D chromatin structure
Assay
469
ChIP-seq
79
total RNA-seq
10
ATAC-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
DNase-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
2
AMP
1
AMP2
Experiment status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
16
tissue
4
in vitro differentiated cells
3
cell line
3
primary cell
Organ
2
liver
2
pancreas
epithelium
Life stage
1
adult
1
child
1
unknown
Available data
1
bed bed3+
1
bedpe bed3+
1
bigWig
1
fastq
1
hdf5
1
hic
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
3
DNA
Date released
1
August, 2021
1
December, 2018
1
October, 2019
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
2
isogenic
1
unreplicated
Audit category:
1
inconsistent assembly
organ_slims!
epithelium
Showing 3 of 3 results
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Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP