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Citing CMDGA
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Assay category
3
3D chromatin structure
Assay
256
total RNA-seq
152
single cell RNA-seq
142
ATAC-seq
106
ChIP-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
2
AMP
1
ITG
RFA
AMP
2
AMP2
1
ITG
Experiment status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Organ
1
kidney
1
pancreas
Life stage
3
adult
Available data
7
hic
bedpe bed3+
3
cool
1
bedpe
Library made from
3
DNA
Date released
1
August, 2021
1
March, 2019
1
March, 2023
Lab
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Replication type
2
anisogenic
1
unreplicated
files.file_type!
bedpe bed3+
award.rfa!
AMP
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR145PQU
released
Hi-C
of kidney
Homo sapiens
kidney female adult (63 years)
Lab:
Katalin Susztak, Upenn
Project:
AMP
Experiment
TSTSR043623
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP