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Schema
Citing CMDGA
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Assay category
5
3D chromatin structure
Assay
136
ChIP-seq
105
ATAC-seq
49
pCHi-C
18
total RNA-seq
11
RRBS
6
MeRIP-seq
5
Hi-C
5
STARR-seq
4
Capture-C
4
single cell RNA-seq
4
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
RNA microarray
1
snDrop-seq
1
whole genome sequencing assay
Project
5
AMP
RFA
4
AMP
1
AMP2
Experiment status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
primary cell
1
cell line
Organ
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
liver
Life stage
20
adult
5
unknown
2
child
2
embryonic
Available data
5
hic
4
bed bed3+
4
bedpe bed3+
bigWig
4
hdf5
Library made from
5
DNA
Date released
3
October, 2019
1
August, 2021
1
March, 2020
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
2
isogenic
2
unreplicated
1
anisogenic
Audit category:
2
inconsistent ontology term
1
audit script error
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bigWig
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Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR430XOJ
released
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR464RKE
released
Audit error
1
Hi-C
of cardiac precursors (cardiac muscle cell)
Homo sapiens
cardiac precursors (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR235SPD
released
Audit error
1
Hi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR251SCT
released
Audit error
1
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP