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Schema
Citing CMDGA
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Assay category
8
3D chromatin structure
Assay
1390
ChIP-seq
1284
total RNA-seq
209
DNase-seq
136
ATAC-seq
100
single cell RNA-seq
18
small RNA-seq
17
WGBS
8
Hi-C
5
FAIRE-seq
5
GRO-seq
Project
5
AMP
3
HPAP
RFA
5
AMP
3
HPAP
Experiment status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
primary cell
1
cell line
Organ
5
epithelium
4
pancreas
3
brain
2
blood vessel
2
vasculature
1
connective tissue
1
liver
Life stage
4
adult
4
unknown
Available data
23
hic
20
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
1
fastq
Library made from
8
DNA
Date released
4
July, 2019
3
October, 2022
1
October, 2019
Lab
5
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Replication type
5
isogenic
3
anisogenic
Audit category:
3
audit script error
Audit category:
1
inconsistent assembly
Showing 8 of 8 results
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Experiment
DSR177NQH
released
Audit error
1
Hi-C
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell female adult (40 years) and female adult (58 years) and male adult (19 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR954WVM
released
Audit error
1
Hi-C
of pancreatic beta cell
Homo sapiens
pancreatic beta cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR767WCG
released
Audit error
1
Hi-C
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR770TGA
released
Hi-C
of brain pericyte
Homo sapiens
brain pericyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR270TQF
released
Hi-C
of astrocyte of the cerebellum
Homo sapiens
astrocyte of the cerebellum
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR933OWU
released
Hi-C
of endothelial cell of hepatic sinusoid
Homo sapiens
endothelial cell of hepatic sinusoid
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR240JNB
released
Hi-C
of brain microvascular endothelial cell
Homo sapiens
brain microvascular endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP