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Schema
Citing CMDGA
Clear Filters
Assay category
6
3D chromatin structure
Assay
1333
ChIP-seq
956
total RNA-seq
231
ATAC-seq
213
single cell RNA-seq
192
DNase-seq
85
RNA microarray
28
WGBS
18
small RNA-seq
10
RRBS
8
pCHi-C
6
Hi-C
4
FAIRE-seq
2
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
6
Homo sapiens
Biosample type
4
tissue
2
cell line
Organ
4
limb
4
musculature of body
1
liver
1
pancreas
Life stage
5
adult
unknown
1
child
Available data
12
bedpe bed3+
hic
1
bed bed3+
1
bigWig
1
fastq
1
hdf5
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
6
DNA
Date released
4
July, 2019
1
December, 2018
1
October, 2019
Lab
6
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
4
unreplicated
2
isogenic
Audit category:
1
inconsistent assembly
replicates.library.biosample.life_stage!
unknown
files.file_type!
hic
Showing 6 of 6 results
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Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR998CGE
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR851SPB
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR920BPY
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR163ZFS
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis male adult (37 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP