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Citing CMDGA
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Assay category
3
3D chromatin structure
Assay
566
ChIP-seq
269
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
63
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
2
AMP
1
ITG
RFA
1
AMP
1
AMP2
1
ITG
Experiment status
3
released
Genome assembly (visualization)
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
1
cell line
1
primary cell
1
tissue
Organ
1
liver
1
pancreas
Life stage
2
adult
1
child
Available data
1
bedpe bed3+
1
fastq
1
hic
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
3
DNA
Date released
July, 2019
1
August, 2021
1
December, 2018
1
March, 2023
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
Replication type
2
anisogenic
1
isogenic
month_released!
July, 2019
assembly!
hg19
Showing 3 of 3 results
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR942HZR
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP