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Schema
Citing CMDGA
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Assay category
1
3D chromatin structure
Assay
128
ChIP-seq
48
ATAC-seq
16
snATAC-seq
5
GRO-seq
5
total RNA-seq
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
5
hg18
Organism
6
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
cell line
1
stem cell
Organ
1
embryo
1
liver
Life stage
5
unknown
1
child
Available data
6
fastq
5
bigWig
Platform
5
Illumina HiSeq 2500
1
Illumina HiSeq 2000
Run type
5
single-ended
1
paired-ended
Read length (nt)
6
50
Library made from
6
DNA
Date released
5
January, 2018
1
December, 2018
Lab
6
AMP-T2D consortium
Replication type
5
unreplicated
1
isogenic
organ_slims!
brain
Showing 6 of 6 results
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Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR520547
released
GRO-seq
of Posterior foregut
Homo sapiens
Posterior foregut
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171680
released
GRO-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR641241
released
GRO-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR626869
released
GRO-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR770475
released
GRO-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Lab:
AMP-T2D consortium
Project:
AMP