Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Assay category
6
3D chromatin structure
Assay
314
ChIP-seq
288
total RNA-seq
111
ATAC-seq
45
pCHi-C
16
DNase-seq
10
RRBS
6
Hi-C
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
single cell RNA-seq
4
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
RNA microarray
1
FAIRE-seq
1
snDrop-seq
1
whole genome sequencing assay
Project
6
AMP
RFA
5
AMP
1
AMP2
Experiment status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
1
cell line
Organ
4
blood vessel
4
epithelium
4
vasculature
3
brain
2
liver
vein
connective tissue
Life stage
21
adult
6
unknown
2
child
2
embryonic
Available data
3
bed bed3+
3
bedpe bed3+
3
bigWig
3
hdf5
3
hic
Library made from
6
DNA
Date released
3
July, 2019
2
October, 2019
1
August, 2021
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
5
isogenic
1
unreplicated
Audit category:
2
inconsistent ontology term
organ_slims!
connective tissue
vein
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR464RKE
released
Audit error
1
Hi-C
of cardiac precursors (cardiac muscle cell)
Homo sapiens
cardiac precursors (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR235SPD
released
Audit error
1
Hi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR270TQF
released
Hi-C
of astrocyte of the cerebellum
Homo sapiens
astrocyte of the cerebellum
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR933OWU
released
Hi-C
of endothelial cell of hepatic sinusoid
Homo sapiens
endothelial cell of hepatic sinusoid
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR240JNB
released
Hi-C
of brain microvascular endothelial cell
Homo sapiens
brain microvascular endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP