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Citing CMDGA
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Assay category
8
3D chromatin structure
Assay
381
ChIP-seq
299
total RNA-seq
128
ATAC-seq
49
pCHi-C
20
DNase-seq
11
RRBS
8
Hi-C
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
single cell RNA-seq
2
snATAC-seq
1
FAIRE-seq
1
snDrop-seq
1
whole genome sequencing assay
Project
8
AMP
RFA
7
AMP
1
AMP2
Experiment status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
5
primary cell
2
in vitro differentiated cells
1
cell line
Organ
3
blood vessel
3
brain
3
epithelium
3
vasculature
2
liver
1
connective tissue
1
vein
Life stage
18
adult
8
unknown
2
child
2
embryonic
Available data
4
bed bed3+
4
bedpe bed3+
4
bigWig
4
hdf5
4
hic
Library made from
8
DNA
Date released
4
July, 2019
2
October, 2019
1
August, 2021
1
March, 2020
Lab
7
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
6
isogenic
1
anisogenic
1
unreplicated
Audit category:
2
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
Showing 8 of 8 results
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Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR430XOJ
released
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR464RKE
released
Audit error
1
Hi-C
of cardiac precursors (cardiac muscle cell)
Homo sapiens
cardiac precursors (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR235SPD
released
Audit error
1
Hi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR770TGA
released
Hi-C
of brain pericyte
Homo sapiens
brain pericyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR270TQF
released
Hi-C
of astrocyte of the cerebellum
Homo sapiens
astrocyte of the cerebellum
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR933OWU
released
Hi-C
of endothelial cell of hepatic sinusoid
Homo sapiens
endothelial cell of hepatic sinusoid
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR240JNB
released
Hi-C
of brain microvascular endothelial cell
Homo sapiens
brain microvascular endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP