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Schema
Citing CMDGA
Clear Filters
Assay category
6
3D chromatin structure
Assay
516
ChIP-seq
45
total RNA-seq
35
ATAC-seq
9
RRBS
9
pCHi-C
7
snATAC-seq
6
Hi-C
6
MeRIP-seq
4
DNase-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
WGBS
2
single cell RNA-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
4
in vitro differentiated cells
primary cell
2
cell line
Organ
1
liver
1
pancreas
Life stage
3
adult
2
unknown
1
child
Available data
4
bedpe bed3+
4
hic
1
bed bed3+
1
bigWig
1
fastq
1
hdf5
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
6
DNA
Date released
3
October, 2019
2
March, 2020
1
December, 2018
Lab
6
AMP-T2D consortium
Replication type
14
unreplicated
6
isogenic
4
anisogenic
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
primary cell
Showing 6 of 6 results
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Experiment
DSR763JZB
released
Audit error
1
Hi-C
of lymphocyte of B lineage (iPSC)
Homo sapiens
lymphocyte of B lineage (iPSC)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR722REK
released
Audit error
1
Hi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR464RKE
released
Audit error
1
Hi-C
of cardiac precursors (cardiac muscle cell)
Homo sapiens
cardiac precursors (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR235SPD
released
Audit error
1
Hi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP