Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Assay category
3
DNA accessibility
Assay
1871
ChIP-seq
1489
total RNA-seq
525
ATAC-seq
360
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
63
WGBS
57
pCHi-C
26
Hi-C
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
2
T1D
RFA
3
AMP
2
T1D
Experiment status
5
released
Genome assembly (visualization)
3
hg19
Organism
5
Homo sapiens
Biosample type
2
cell line
2
tissue
1
primary cell
Organ
2
pancreas
1
blood vessel
1
epithelium
1
vasculature
1
vein
Life stage
3
unknown
1
adult
1
newborn
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
2
fastq
1
tar
Platform
2
Illumina Genome Analyzer I
Run type
2
single-ended
Read length (nt)
1
35
1
50
Library made from
5
DNA
Date released
2
February, 2023
July, 2019
1
August, 2017
1
November, 2018
1
October, 2019
Lab
3
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Replication type
3
unreplicated
1
anisogenic
1
isogenic
month_released!
July, 2019
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
Experiment
DSR498QQL
released
HiChIP
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR895OVT
released
HiChIP
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR803CTG
released
FAIRE-seq
of pancreas
Homo sapiens
pancreas adult (54 years) and adult (60 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP