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Assay category
1
DNA sequencing
Assay
1690
ChIP-seq
1337
total RNA-seq
426
ATAC-seq
280
single cell RNA-seq
185
DNase-seq
87
RNA microarray
79
snATAC-seq
75
WGBS
29
pCHi-C
25
Hi-C
21
RRBS
7
small RNA-seq
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
snDrop-seq
1
whole genome sequencing assay
Project
7
AMP
RFA
6
AMP
1
AMP2
Experiment status
7
released
Organism
7
Homo sapiens
Target of assay
3
control
3
nucleotide modification
Biosample type
7
cell line
Organ
6
epithelium
6
pancreas
1
liver
Life stage
7
unknown
Available data
1
vcf
Library made from
6
RNA
1
DNA
Date released
6
November, 2020
1
August, 2021
Lab
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Replication type
6
isogenic
anisogenic
1
unreplicated
Audit category:
6
inconsistent ontology term
replication_type!
anisogenic
Showing 7 of 7 results
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Experiment
DSR246XUG
released
whole genome sequencing assay
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR399KWJ
released
Audit error
1
MeRIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
N6-Methyladenosine_m6A
Lab:
Rohit N. Kulkarni, M.D., Ph.D.
Project:
AMP
Experiment
DSR885XWK
released
Audit error
1
MeRIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
Control
Lab:
Rohit N. Kulkarni, M.D., Ph.D.
Project:
AMP
Experiment
DSR814PSX
released
Audit error
1
MeRIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
N6-Methyladenosine_m6A
Lab:
Rohit N. Kulkarni, M.D., Ph.D.
Project:
AMP
Experiment
DSR251XSB
released
Audit error
1
MeRIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
Control
Lab:
Rohit N. Kulkarni, M.D., Ph.D.
Project:
AMP
Experiment
DSR781LLU
released
Audit error
1
MeRIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
N6-Methyladenosine_m6A
Lab:
Rohit N. Kulkarni, M.D., Ph.D.
Project:
AMP
Experiment
DSR282KWU
released
Audit error
1
MeRIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
Control
Lab:
Rohit N. Kulkarni, M.D., Ph.D.
Project:
AMP