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Citing CMDGA
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Assay
1482
total RNA-seq
1257
ChIP-seq
441
ATAC-seq
357
single cell RNA-seq
190
DNase-seq
87
RNA microarray
77
snATAC-seq
67
WGBS
36
pCHi-C
24
Hi-C
18
small RNA-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
5
AMP
RFA
3
AMP2
2
AMP
Experiment status
5
released
Genome assembly (visualization)
2
hg19
Organism
5
Homo sapiens
Biosample type
3
cell line
2
in vitro differentiated cells
Organ
2
connective tissue
2
epithelium
2
pancreas
Life stage
5
unknown
Available data
2
bed bed3+
Library made from
4
DNA
1
RNA
Date released
5
August, 2021
Lab
2
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
Replication type
isogenic
3
unreplicated
2
anisogenic
Audit category:
3
inconsistent ontology term
replication_type!
isogenic
Showing 5 of 5 results
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Experiment
DSR398PHK
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR818RUI
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR976OUK
released
Capture-C
of osteoblast
Homo sapiens
osteoblast
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
DSR621POD
released
Capture-C
of adipocyte
Homo sapiens
adipocyte
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
DSR433YZO
released
Audit error
1
STARR-seq
of Synthesized DNA
Homo sapiens
Synthesized DNA
Lab:
Bing Ren, UCSD
Project:
AMP