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Citing CMDGA
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Assay category
2
DNA accessibility
Assay
280
ChIP-seq
247
total RNA-seq
192
ATAC-seq
89
single cell RNA-seq
49
pCHi-C
19
Hi-C
19
RRBS
12
snATAC-seq
11
small RNA-seq
10
MeRIP-seq
8
WGBS
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
snDrop-seq
1
DNAme array
Project
6
AMP
RFA
4
AMP2
2
AMP
Experiment status
6
released
Organism
6
Homo sapiens
Biosample type
4
cell line
2
primary cell
Organ
4
kidney
2
epithelium
2
liver
Life stage
4
unknown
2
adult
Available data
47
bam
47
bed narrowPeak
bigBed narrowPeak
47
bigWig
44
bed broadPeak
44
bigBed broadPeak
42
bed bed3+
4
fastq
Library made from
4
RNA
2
DNA
Date released
4
August, 2021
2
October, 2019
Lab
4
Bing Ren, UCSD
2
AMP-T2D consortium
Replication type
4
isogenic
2
anisogenic
unreplicated
replication_type!
unreplicated
files.file_type!
bigBed narrowPeak
Showing 6 of 6 results
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Experiment
DSR894OMX
released
STARR-seq
of HEK293T
Homo sapiens
HEK293T
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR661CGV
released
STARR-seq
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR090FJR
released
STARR-seq
of HEK293T
Homo sapiens
HEK293T
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR594DXF
released
STARR-seq
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP