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Citing CMDGA
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Assay category
1
DNA methylation
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
7
AMP
RFA
5
AMP2
2
AMP
Experiment status
7
released
Genome assembly (visualization)
1
GRCh38
Organism
6
Homo sapiens
Biosample type
47
primary cell
27
tissue
7
cell line
Organ
3
liver
2
kidney
Life stage
5
unknown
1
child
Available data
1
bam
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
1
fastq
1
txt
Platform
1
Illumina HiSeq X Ten
Run type
1
paired-ended
Read length (nt)
1
151
Library made from
5
RNA
1
DNA
Date released
5
August, 2021
1
November, 2018
1
October, 2022
Lab
5
Bing Ren, UCSD
2
AMP-T2D consortium
Replication type
5
isogenic
2
unreplicated
Audit category:
1
inconsistent ontology term
Showing 7 of 7 results
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Experiment
DSR700KTH
released
MPRA
of MIN6
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR433YZO
released
Audit error
1
STARR-seq
of Synthesized DNA
Homo sapiens
Synthesized DNA
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR894OMX
released
STARR-seq
of HEK293T
Homo sapiens
HEK293T
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR661CGV
released
STARR-seq
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR090FJR
released
STARR-seq
of HEK293T
Homo sapiens
HEK293T
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR594DXF
released
STARR-seq
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
TSTSR496DZA
released
WGBS
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP