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Citing CMDGA
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Assay category
7
DNA methylation
Assay
962
ChIP-seq
403
total RNA-seq
167
DNase-seq
161
ATAC-seq
148
single cell RNA-seq
49
pCHi-C
21
snATAC-seq
13
Hi-C
10
small RNA-seq
7
WGBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
6
HPAP
1
AMP
RFA
6
HPAP
1
AMP
Experiment status
7
released
Organism
7
Homo sapiens
Biosample type
6
primary cell
1
tissue
Organ
6
epithelium
6
pancreas
1
liver
Life stage
adult
7
child
Available data
6
bam
bed bedMethyl
6
bigBed bedMethyl
6
bigWig
5
fastq
4
zippedFastqFolder
2
tsv
Platform
6
Illumina NovaSeq 6000
1
Illumina HiSeq 2500
Run type
6
paired-ended
1
single-ended
Read length (nt)
4
101
3
100
Library made from
7
DNA
Date released
4
May, 2022
2
February, 2021
1
August, 2017
Lab
6
Klaus Kaestner, Upenn
1
AMP-T2D consortium
Replication type
5
unreplicated
2
isogenic
files.file_type!
bed bedMethyl
replicates.library.biosample.life_stage!
adult
Showing 7 of 7 results
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Experiment
DSR309DLG
released
WGBS
of pancreatic beta cell
Homo sapiens
pancreatic beta cell male child (8 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR818WOM
released
WGBS
of pancreatic beta cell
Homo sapiens
pancreatic beta cell male child (13 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR800UDW
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (8 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR838FDD
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (13 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR163MXE
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (3 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR791IRT
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female child (14 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
TSTSR621783
released
WGBS
of liver
Homo sapiens
liver male child (3 years)
Lab:
AMP-T2D consortium
Project:
AMP