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Citing CMDGA
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Assay category
7
DNA methylation
Assay
848
ChIP-seq
342
total RNA-seq
153
DNase-seq
137
single cell RNA-seq
125
ATAC-seq
49
pCHi-C
21
snATAC-seq
10
small RNA-seq
8
Hi-C
7
WGBS
5
GRO-seq
5
RRBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
RNA microarray
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
6
GRCh38
Organism
7
Homo sapiens
Biosample type
6
tissue
1
cell line
Organ
epithelium
6
pancreas
3
heart
2
liver
1
adipose tissue
1
connective tissue
1
limb
1
musculature of body
Life stage
adult
5
child
2
embryonic
Available data
6
bam
6
bed bedMethyl
6
bigBed bedMethyl
6
bigWig
3
fastq
Platform
2
Illumina HiSeq 2500
1
Illumina HiSeq X Ten
Run type
2
single-ended
1
paired-ended
Read length (nt)
2
100
1
151
Library made from
7
DNA
Date released
4
July, 2019
2
August, 2017
1
November, 2018
Lab
7
AMP-T2D consortium
Replication type
6
unreplicated
1
isogenic
organ_slims!
epithelium
replicates.library.biosample.life_stage!
adult
Showing 7 of 7 results
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Experiment
DSR372NHK
released
WGBS
of muscle of leg
Homo sapiens
muscle of leg female embryo (113 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR790KQG
released
WGBS
of heart right ventricle
Homo sapiens
heart right ventricle male child (3 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR108KUP
released
WGBS
of heart left ventricle
Homo sapiens
heart left ventricle male child (3 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR583GYT
released
WGBS
of heart
Homo sapiens
heart embryo (101 day)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR496DZA
released
WGBS
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR031119
released
WGBS
of adipose tissue
Homo sapiens
adipose tissue male child (3 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR621783
released
WGBS
of liver
Homo sapiens
liver male child (3 years)
Lab:
AMP-T2D consortium
Project:
AMP