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Citing CMDGA
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Assay category
5
DNA methylation
Assay
65
ChIP-seq
31
total RNA-seq
25
single cell RNA-seq
14
ATAC-seq
10
snATAC-seq
5
WGBS
4
DNase-seq
2
Hi-C
Project
3
AMP
2
HPAP
RFA
3
AMP
2
HPAP
Experiment status
5
released
Genome assembly (visualization)
3
GRCh38
Organism
5
Homo sapiens
Biosample type
2
primary cell
2
tissue
1
cell line
Organ
2
epithelium
2
heart
2
pancreas
1
liver
Life stage
21
adult
5
child
2
embryonic
Available data
zippedFastqFolder
3
bam
3
bed bedMethyl
3
bigBed bedMethyl
3
bigWig
3
fastq
2
tsv
Platform
2
Illumina NovaSeq 6000
1
Illumina HiSeq X Ten
Run type
3
paired-ended
single-ended
Read length (nt)
2
100
1
151
Library made from
5
DNA
Date released
2
February, 2021
2
July, 2019
1
November, 2018
Lab
3
AMP-T2D consortium
2
Klaus Kaestner, Upenn
Replication type
3
isogenic
2
unreplicated
files.run_type!
single-ended
files.file_type!
zippedFastqFolder
Showing 5 of 5 results
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Experiment
DSR163MXE
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (3 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR791IRT
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female child (14 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR790KQG
released
WGBS
of heart right ventricle
Homo sapiens
heart right ventricle male child (3 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR108KUP
released
WGBS
of heart left ventricle
Homo sapiens
heart left ventricle male child (3 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR496DZA
released
WGBS
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP