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Schema
Citing CMDGA
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Assay category
3
DNA methylation
Assay
462
ChIP-seq
66
ATAC-seq
49
total RNA-seq
19
DNase-seq
18
pCHi-C
11
RRBS
7
Hi-C
6
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
WGBS
3
single cell RNA-seq
1
FAIRE-seq
Project
2
HPAP
1
AMP
RFA
2
HPAP
1
AMP
Experiment status
3
released
Genome assembly (visualization)
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
cell line
Organ
2
epithelium
2
pancreas
1
liver
Life stage
adult
3
child
Available data
3
fastq
2
tsv
1
bam
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Platform
2
Illumina NovaSeq 6000
1
Illumina HiSeq X Ten
Run type
3
paired-ended
Read length (nt)
2
100
1
151
Library made from
3
DNA
Date released
2
February, 2021
1
November, 2018
Lab
2
Klaus Kaestner, Upenn
1
AMP-T2D consortium
Replication type
10
unreplicated
3
isogenic
replicates.library.biosample.life_stage!
adult
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Experiment
DSR163MXE
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (3 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR791IRT
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female child (14 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
TSTSR496DZA
released
WGBS
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP