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Schema
Citing CMDGA
Clear Filters
Assay category
2
DNA accessibility
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
8
AMP
RFA
8
AMP
Experiment status
8
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
203
tissue
48
primary cell
8
cell line
6
in vitro differentiated cells
4
stem cell
Organ
3
kidney
2
liver
1
epithelium
1
mammary gland
1
pancreas
Life stage
5
unknown
2
adult
1
child
Available data
5
tsv
2
bam
2
bed bed3+
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
bed broadPeak
1
bigBed broadPeak
Library made from
8
DNA
Date released
4
March, 2020
2
October, 2019
1
February, 2021
1
May, 2020
Lab
8
AMP-T2D consortium
Replication type
8
isogenic
Audit category:
2
inconsistent ontology term
assay_title!
FAIRE-seq
Showing 8 of 8 results
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Experiment
DSR583PNT
released
pCHi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR469VYN
released
pCHi-C
of fibroblast cell line
Homo sapiens
fibroblast cell line
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR452PKJ
released
pCHi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR449QWM
released
Audit error
1
pCHi-C
of RCC 7860 VHL
Homo sapiens
RCC 7860 VHL
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR352APC
released
pCHi-C
of MCF-7
Homo sapiens
MCF-7
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR077AQW
released
Audit error
1
pCHi-C
of RCC 7860 vector
Homo sapiens
RCC 7860 vector
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR718ICF
released
DNase-seq
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR366LGT
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP