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Citing CMDGA
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Assay
129
total RNA-seq
57
ChIP-seq
41
ATAC-seq
9
single cell RNA-seq
7
pCHi-C
6
MeRIP-seq
5
Hi-C
3
DNase-seq
2
Capture-C
2
RRBS
1
STARR-seq
Project
6
AMP
1
T1D
RFA
6
AMP
1
T1D
Experiment status
7
released
Genome assembly (visualization)
2
hg19
Organism
7
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
cell line
tissue
1
primary cell
1
stem cell
Organ
2
kidney
1
connective tissue
Life stage
5
unknown
2
adult
Available data
4
tsv
2
bedpe bed3+
2
ibed
Library made from
7
DNA
Date released
6
March, 2020
1
May, 2021
Lab
6
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Replication type
5
isogenic
2
anisogenic
Audit category:
7
inconsistent ontology term
assay_title!
shRNA RNA-seq
biosample_type!
tissue
Showing 7 of 7 results
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Experiment
DSR409IRC
released
Audit error
1
pCHi-C
of naive B cel
Homo sapiens
naive B cel and naive B cell
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR881MKA
released
Audit error
1
pCHi-C
of mesenchymal stem cell
Homo sapiens
mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR719RES
released
Audit error
1
pCHi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR535XNG
released
Audit error
1
pCHi-C
of lymphocyte of B lineage (iPSC)
Homo sapiens
lymphocyte of B lineage (iPSC)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR382TEU
released
Audit error
1
pCHi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR449QWM
released
Audit error
1
pCHi-C
of RCC 7860 VHL
Homo sapiens
RCC 7860 VHL
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR077AQW
released
Audit error
1
pCHi-C
of RCC 7860 vector
Homo sapiens
RCC 7860 vector
Lab:
AMP-T2D consortium
Project:
AMP