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Citing CMDGA
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Assay category
1
DNA methylation
Assay
474
total RNA-seq
153
ChIP-seq
25
ATAC-seq
9
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Project
5
AMP
1
T1D
RFA
5
AMP
1
T1D
Experiment status
6
released
Genome assembly (visualization)
2
hg19
Organism
6
Homo sapiens
Biosample type
3
primary cell
1
in vitro differentiated cells
1
stem cell
1
tissue
Organ
6
connective tissue
6
epithelium
6
kidney
6
musculature of body
5
eye
5
heart
5
liver
4
brain
3
pancreas
2
adipose tissue
2
intestine
2
thymus
2
vasculature
1
adrenal gland
1
blood vessel
1
bone element
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Life stage
5
unknown
1
adult
Available data
2
tsv
1
bam
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
fastq
Platform
1
Illumina HiSeq 4000
Run type
1
paired-ended
Read length (nt)
1
69
Library made from
6
DNA
Date released
2
March, 2020
1
August, 2018
1
February, 2021
1
July, 2019
1
May, 2021
Lab
5
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Replication type
3
anisogenic
2
isogenic
1
unreplicated
Audit category:
2
inconsistent ontology term
Showing 6 of 6 results
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Experiment
DSR241RZY
released
pCHi-C
of osteoblast
Homo sapiens
osteoblast adult
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR916ELW
released
pCHi-C
of adult endothelial progenitor cell
Homo sapiens
adult endothelial progenitor cell
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR881MKA
released
Audit error
1
pCHi-C
of mesenchymal stem cell
Homo sapiens
mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR437GEP
released
pCHi-C
of adipose tissue
Homo sapiens
adipose tissue
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR253RYM
released
Audit error
1
RRBS
of cardiac fibroblast
Homo sapiens
cardiac fibroblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR423QSN
released
pCHi-C
of white fat cell
Homo sapiens
white adipose cell
Lab:
AMP-T2D consortium
Project:
AMP