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Assay category
4
Transcription
Assay
97
total RNA-seq
84
RNA microarray
44
ChIP-seq
23
ATAC-seq
9
pCHi-C
4
DNase-seq
4
Hi-C
4
single cell RNA-seq
2
RRBS
1
STARR-seq
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
4
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
primary cell
Organ
pancreas
1
epithelium
Life stage
2
adult
2
unknown
Available data
4
tsv
2
bam
2
bigWig
2
fastq
Platform
2
Illumina HiSeq 2000
Run type
2
single-ended
Read length (nt)
2
43
Library insert size (nt)
2
>100
Library made from
4
RNA
Date released
2
December, 2019
1
July, 2018
1
June, 2018
Lab
4
AMP-T2D consortium
Replication type
2
isogenic
2
unreplicated
Audit category:
7
audit script error
4
inconsistent ontology term
lab.title!
Xin Sun, UCSD
organ_slims!
pancreas
Showing 4 of 4 results
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Experiment
DSR690SBQ
released
Audit error
2
single cell RNA-seq
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR054HMA
released
Audit error
2
single cell RNA-seq
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR824095
released
Audit error
1
single cell RNA-seq
of unclassified exocrine cell
Homo sapiens
unclassified exocrine cell male adult (57 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR902213
released
Audit error
1
single cell RNA-seq
of unclassified exocrine cell
Homo sapiens
unclassified exocrine cell male adult (23 years)
Lab:
AMP-T2D consortium
Project:
AMP