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Assay category
1
DNA sequencing
Assay
1673
ChIP-seq
1397
total RNA-seq
489
ATAC-seq
361
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
2
AMP
RFA
1
AMP
1
AMP2
Experiment status
2
released
Genome assembly (visualization)
1
hg18
Organism
2
Homo sapiens
Biosample type
in vitro differentiated cells
1
cell line
1
stem cell
Organ
1
liver
Life stage
2
unknown
Available data
1
bigWig
1
fastq
1
vcf
Platform
1
Illumina HiSeq 2500
Run type
1
single-ended
Read length (nt)
1
50
Library made from
2
DNA
Date released
1
August, 2021
1
January, 2018
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
2
unreplicated
assay_title!
RRBS
biosample_type!
in vitro differentiated cells
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Experiment
DSR246XUG
released
whole genome sequencing assay
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
TSTSR770475
released
GRO-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Lab:
AMP-T2D consortium
Project:
AMP