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Assay category
1
DNA accessibility
1
DNA sequencing
Assay
1286
total RNA-seq
1116
ChIP-seq
336
ATAC-seq
274
single cell RNA-seq
163
DNase-seq
87
RNA microarray
72
snATAC-seq
67
WGBS
15
Hi-C
8
pCHi-C
7
small RNA-seq
5
GRO-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
FAIRE-seq
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
snDrop-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
2
AMP2
1
AMP
Experiment status
3
released
Genome assembly (visualization)
1
hg19
Organism
3
Homo sapiens
Biosample type
2
cell line
1
tissue
Organ
1
liver
1
pancreas
Life stage
3
unknown
Available data
1
bam
1
bed narrowPeak
1
bigBed narrowPeak
1
bigWig
1
fastq
1
vcf
Platform
1
Illumina Genome Analyzer I
Run type
1
single-ended
Read length (nt)
1
35
Library made from
2
DNA
1
RNA
Date released
2
August, 2021
1
August, 2017
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
Replication type
5
isogenic
3
anisogenic
3
unreplicated
Audit category:
1
inconsistent ontology term
Showing 3 of 3 results
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Experiment
DSR433YZO
released
Audit error
1
STARR-seq
of Synthesized DNA
Homo sapiens
Synthesized DNA
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR246XUG
released
whole genome sequencing assay
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP