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Citing CMDGA
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Assay category
3
DNA accessibility
Assay
205
ChIP-seq
98
total RNA-seq
36
single cell RNA-seq
27
snATAC-seq
19
ATAC-seq
8
WGBS
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
DNase-seq
1
Hi-C
1
pCHi-C
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
14
hg19
GRCh38
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Organ
2
pancreas
Life stage
2
unknown
1
adult
Available data
7
bam
7
bed narrowPeak
7
bigBed narrowPeak
7
bigWig
3
fastq
1
bed broadPeak
1
bigBed broadPeak
1
tar
Platform
2
Illumina Genome Analyzer I
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
1
Illumina HiSeq 2000
Run type
3
single-ended
1
paired-ended
Read length (nt)
1
35
1
36
1
50
1
101
Library made from
3
DNA
Date released
2
August, 2017
1
November, 2018
Lab
3
AMP-T2D consortium
Replication type
1
anisogenic
1
isogenic
1
unreplicated
assembly!
GRCh38
Showing 3 of 3 results
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Experiment
TSTSR803CTG
released
FAIRE-seq
of pancreas
Homo sapiens
pancreas adult (54 years) and adult (60 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP