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Citing CMDGA
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Assay category
3
DNA accessibility
Assay
537
ChIP-seq
294
ATAC-seq
199
single cell RNA-seq
199
total RNA-seq
84
RNA microarray
78
snATAC-seq
54
WGBS
53
pCHi-C
31
Hi-C
17
RRBS
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
GRCh38
112
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Organ
2
epithelium
kidney
1
liver
Life stage
2
unknown
1
adult
Available data
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
bed broadPeak
1
bigBed broadPeak
1
fastq
Platform
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
1
Illumina HiSeq 2000
Run type
1
paired-ended
1
single-ended
Read length (nt)
1
36
1
101
Library made from
3
DNA
Date released
3
August, 2017
Lab
3
AMP-T2D consortium
Replication type
2
isogenic
1
unreplicated
assembly!
GRCh38
organ_slims!
adipose tissue
kidney
Showing 3 of 3 results
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Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP