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Schema
Citing CMDGA
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Assay category
4
DNA accessibility
Assay
281
ChIP-seq
195
ATAC-seq
115
total RNA-seq
89
single cell RNA-seq
56
snATAC-seq
47
WGBS
32
pCHi-C
14
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
DNase-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
GRCh38
23
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
tissue
Organ
2
epithelium
2
kidney
Life stage
2
adult
2
unknown
Available data
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
bed broadPeak
1
bigBed broadPeak
1
fastq
Platform
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
1
Illumina HiSeq 2000
Run type
1
paired-ended
1
single-ended
Read length (nt)
1
36
1
101
Library made from
4
DNA
Date released
2
August, 2017
2
October, 2019
Lab
4
AMP-T2D consortium
Replication type
2
anisogenic
2
isogenic
assembly!
GRCh38
organ_slims!
vein
biosample_type!
tissue
Showing 4 of 4 results
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Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP