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Citing CMDGA
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Assay category
7
3D chromatin structure
Assay
566
ChIP-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
75
WGBS
53
pCHi-C
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
6
AMP
1
ITG
RFA
5
AMP
1
AMP2
1
ITG
Experiment status
7
released
Genome assembly (visualization)
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
5
tissue
1
cell line
1
primary cell
Organ
4
limb
4
musculature of body
1
liver
1
pancreas
Life stage
6
adult
1
child
Available data
1
bedpe bed3+
1
fastq
1
hic
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
7
DNA
Date released
4
July, 2019
1
August, 2021
1
December, 2018
1
March, 2023
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
Replication type
4
unreplicated
2
anisogenic
1
isogenic
assembly!
hg19
assay_slims!
DNA accessibility
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
Showing 7 of 7 results
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR942HZR
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR998CGE
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR851SPB
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR920BPY
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR163ZFS
released
Hi-C
of gastrocnemius medialis
Homo sapiens
gastrocnemius medialis male adult (37 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP