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Assay category
1
DNA accessibility
Assay
532
ChIP-seq
259
single cell RNA-seq
245
ATAC-seq
200
total RNA-seq
87
RNA microarray
79
snATAC-seq
75
WGBS
26
pCHi-C
6
MeRIP-seq
5
GRO-seq
5
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNase-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
snDrop-seq
1
whole genome sequencing assay
Project
1
AMP
RFA
1
AMP
Experiment status
1
released
Genome assembly (visualization)
hg19
2
GRCh38
Organism
1
Homo sapiens
Biosample type
1
tissue
Organ
1
liver
Life stage
1
adult
Available data
13
bam
bed bed3+
13
bed broadPeak
13
bed narrowPeak
13
bigBed broadPeak
13
bigBed narrowPeak
13
bigWig
Library made from
1
DNA
Date released
1
August, 2017
Lab
1
AMP-T2D consortium
Replication type
anisogenic
1
unreplicated
assembly!
hg19
files.file_type!
bed bed3+
replication_type!
anisogenic
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Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP