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Schema
Citing CMDGA
Clear Filters
Assay category
3
DNA binding
Assay
4
total RNA-seq
3
ChIP-seq
1
GRO-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
3
Homo sapiens
Target of assay
2
transcription factor
1
control
Biosample type
3
in vitro differentiated cells
Organ
3
embryo
Life stage
3
unknown
Available data
3
bam
3
fastq
2
bed narrowPeak
2
bigWig
Platform
3
Illumina HiSeq 2500
Run type
3
single-ended
Read length (nt)
15
36
4
50
Library made from
3
DNA
Date released
3
December, 2017
Lab
3
AMP-T2D consortium
Replication type
3
unreplicated
Audit category:
1
inconsistent control read length
audit.ERROR.category!
inconsistent control
files.read_length!
36
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Experiment
TSTSR303983
released
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
PDX1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR236798
released
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR209943
released
Audit warning
1
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
FOXA2
Lab:
AMP-T2D consortium
Project:
AMP