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Citing CMDGA
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Assay category
7
DNA binding
Assay
89
total RNA-seq
10
ATAC-seq
7
ChIP-seq
4
Hi-C
3
pCHi-C
2
single cell RNA-seq
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
5
GRCh38
5
hg19
Organism
7
Homo sapiens
Target of assay
3
transcription factor
2
control
2
histone
2
histone modification
2
narrow histone mark
Biosample type
25
cell line
25
primary cell
7
in vitro differentiated cells
2
tissue
Organ
4
embryo
4
epithelium
Life stage
7
unknown
Available data
7
bam
5
bed narrowPeak
5
bigWig
4
fastq
3
tagAlign
Platform
4
Illumina HiSeq 2500
Run type
4
single-ended
Read length (nt)
3
36
1
50
Library made from
7
DNA
Date released
4
December, 2017
3
May, 2021
Lab
7
AMP-T2D consortium
Replication type
7
unreplicated
Audit category:
7
inconsistent ontology term
Audit category:
1
inconsistent control read length
Showing 7 of 7 results
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Experiment
DSR708PNY
released
Audit error
1
ChIP-seq
of cardiomyocytes
Homo sapiens
cardiomyocytes
Target:
NR2F2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR123YJD
released
Audit error
1
ChIP-seq
of cardiomyocytes
Homo sapiens
cardiomyocytes
Target:
TBX5
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR800JBR
released
Audit error
1
ChIP-seq
of cardiomyocytes
Homo sapiens
cardiomyocytes
Target:
HEY2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR011381
released
Audit error
1
ChIP-seq
of Hepatic endoderm
Homo sapiens
Hepatic endoderm (liver primordium)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR443330
released
Audit error
1
ChIP-seq
of Hepatic endoderm
Homo sapiens
Hepatic endoderm (liver primordium)
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR369487
released
Audit error
1
Audit warning
1
ChIP-seq
of Hepatic endoderm
Homo sapiens
Hepatic endoderm (liver primordium)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR864498
released
Audit error
1
ChIP-seq
of Hepatic endoderm
Homo sapiens
Hepatic endoderm (liver primordium)
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP