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Assay category
3
DNA accessibility
1
Transcription
Assay
481
ChIP-seq
384
ATAC-seq
263
single cell RNA-seq
242
total RNA-seq
87
RNA microarray
66
snATAC-seq
58
WGBS
40
pCHi-C
29
Hi-C
21
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
DNase-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
1
community
RFA
3
AMP
1
community
Experiment status
4
released
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
cell line
1
tissue
Organ
2
epithelium
2
kidney
1
liver
Life stage
3
adult
Available data
209
bam
209
bed narrowPeak
209
bigBed narrowPeak
bigWig
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
12
fastq
Library made from
3
DNA
Date released
2
October, 2019
1
August, 2017
1
March, 2023
Lab
3
AMP-T2D consortium
1
Anna Gloyn, Oxford
Replication type
2
anisogenic
2
unreplicated
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Experiment
DSR192DLS
released
shRNA RNA-seq
of EndoC-BH1
Lab:
Anna Gloyn, Oxford
Project:
community
Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP