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Citing CMDGA
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Assay category
6
DNA binding
Assay
6
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
6
Homo sapiens
Target of assay
transcription factor
10
chromatin remodeller
7
RNA binding protein
4
control
1
histone
1
histone modification
1
narrow histone mark
Biosample type
6
cell line
Organ
6
liver
Life stage
6
child
Available data
6
bam
6
fastq
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
Platform
3
Illumina HiSeq 2000
2
Illumina HiSeq 4000
1
Illumina HiSeq 2500
Run type
69
single-ended
6
paired-ended
Read length (nt)
5
100
1
25
1
36
1
76
Library made from
6
DNA
Date released
6
November, 2017
Lab
6
AMP-T2D consortium
Replication type
6
isogenic
Audit category:
1
missing controlled_by
target.investigated_as!
transcription factor
Showing 6 of 6 results
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Experiment
TSTSR746922
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR315987
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
rabbit-IgG-control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR344502
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
TOE1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR141124
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR827394
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR734739
released
Audit not_compliant
1
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP