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Assay category
3
DNA binding
3
Transcription
1
DNA accessibility
Assay
3
ChIP-seq
3
total RNA-seq
1
ATAC-seq
pCHi-C
Project
7
AMP
RFA
6
AMP
1
AMP2
Experiment status
7
released
Genome assembly (visualization)
6
hg19
5
GRCh38
Organism
7
Homo sapiens
Target of assay
2
histone
2
histone modification
1
broad histone mark
1
control
1
narrow histone mark
Biosample type
6
in vitro differentiated cells
1
primary cell
Life stage
6
embryonic
1
unknown
Available data
6
bam
6
bigWig
5
fastq
3
bed narrowPeak
3
tsv
1
bed bedgraph
1
txt
Platform
4
Illumina Genome Analyzer IIx
2
Illumina HiSeq 2000
Run type
5
single-ended
Read length (nt)
3
36
2
100
1
101
Library insert size (nt)
2
225-275
Library made from
4
DNA
3
RNA
Date released
5
February, 2018
1
February, 2023
1
May, 2021
Lab
Kyle Gaulton, UCSD
6
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Replication type
5
unreplicated
1
anisogenic
1
isogenic
lab.title!
Kyle Gaulton, UCSD
assay_title!
pCHi-C
Showing 7 of 7 results
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Experiment
DSR470JFP
released
ATAC-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
DSR213JXG
released
total RNA-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell embryo (0 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR787281
released
total RNA-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR358715
released
total RNA-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR403069
released
ChIP-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR086684
released
ChIP-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Target:
H3K27me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR909874
released
ChIP-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP