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Citing CMDGA
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Assay category
2
DNA binding
2
Transcription
1
DNA accessibility
Assay
2
ChIP-seq
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
Project
6
AMP
RFA
5
AMP
1
AMP2
Experiment status
6
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
6
Homo sapiens
Target of assay
2
histone
2
histone modification
broad histone mark
1
control
1
narrow histone mark
Biosample type
6
in vitro differentiated cells
Life stage
4
embryonic
2
unknown
Available data
4
bam
4
bigWig
4
fastq
3
tsv
2
bed narrowPeak
1
bed bedgraph
1
txt
Platform
3
Illumina Genome Analyzer IIx
2
Illumina HiSeq 2000
Run type
4
single-ended
Read length (nt)
2
36
2
100
1
101
Library insert size (nt)
2
225-275
Library made from
4
DNA
2
RNA
Date released
May, 2021
4
February, 2018
1
February, 2023
1
March, 2020
Lab
5
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Replication type
4
unreplicated
1
anisogenic
1
isogenic
month_released!
May, 2021
target.investigated_as!
broad histone mark
Showing 6 of 6 results
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Experiment
DSR470JFP
released
ATAC-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
DSR062TSX
released
pCHi-C
of embryonic stem cell
Homo sapiens
embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR787281
released
total RNA-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR358715
released
total RNA-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR403069
released
ChIP-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR909874
released
ChIP-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP