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Assay category
3
DNA binding
1
DNA accessibility
1
Transcription
Assay
3
ChIP-seq
1
ATAC-seq
1
pCHi-C
1
total RNA-seq
Project
6
AMP
RFA
5
AMP
1
AMP2
Experiment status
6
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
6
Homo sapiens
Target of assay
2
histone
2
histone modification
1
broad histone mark
1
control
1
narrow histone mark
Biosample type
5
in vitro differentiated cells
1
primary cell
Life stage
4
embryonic
2
unknown
Available data
4
bam
4
bigWig
3
bed narrowPeak
3
fastq
2
tsv
1
bed bedgraph
1
txt
Platform
3
Illumina Genome Analyzer IIx
Run type
3
single-ended
Read length (nt)
3
36
Library insert size (nt)
225-275
Library made from
5
DNA
1
RNA
Date released
3
February, 2018
1
February, 2023
1
March, 2020
1
May, 2021
Lab
Kyle Gaulton, UCSD
5
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Replication type
3
unreplicated
2
anisogenic
1
isogenic
replicates.library.size_range!
225-275
lab.title!
Kyle Gaulton, UCSD
Showing 6 of 6 results
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Experiment
DSR470JFP
released
ATAC-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
DSR213JXG
released
total RNA-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell embryo (0 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR062TSX
released
pCHi-C
of embryonic stem cell
Homo sapiens
embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR403069
released
ChIP-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR086684
released
ChIP-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Target:
H3K27me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR909874
released
ChIP-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP