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Citing CMDGA
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Assay category
6
DNA binding
Assay
6
ChIP-seq
1
DNase-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
6
GRCh38
6
hg19
Organism
6
Homo sapiens
Target of assay
7
histone
7
histone modification
broad histone mark
3
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Biosample type
6
tissue
Organ
6
pancreas
Life stage
6
unknown
1
adult
Available data
6
bam
6
bed bed3+
6
fastq
4
bed narrowPeak
4
bigWig
Platform
6
Illumina Genome Analyzer
6
Illumina Genome Analyzer II
6
Illumina HiSeq 2000
2
Illumina Genome Analyzer IIx
2
Illumina HiSeq 2500
Run type
6
single-ended
Read length (nt)
6
36
Library made from
6
DNA
Date released
4
August, 2017
2
September, 2017
Lab
6
AMP-T2D consortium
Replication type
5
anisogenic
1
unreplicated
Audit category:
1
missing controlled_by
target.investigated_as!
broad histone mark
Showing 6 of 6 results
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Experiment
TSTSR605693
released
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female (28 years) and female (41 year) and female (45 years) and male (51 year) and male adult (19 years)
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR338457
released
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female (37 years) and female (41 year) and male (16 years) and male (36 years) and male (60 years)
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR406941
released
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female (28 years) and female (41 year) and male (32 years) and male (51 year)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR377734
released
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female (22 years) and female (28 years) and female (41 year) and male (51 year)
Target:
H3K4me2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR419074
released
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (60 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR033518
released
Audit not_compliant
1
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female (37 years) and female (41 year) and female (58 years) and male (36 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP